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Package: bayesian.simulations 0.2.2

Anthony Todd Fojo

bayesian.simulations: Bayesian Methods for Calibrating Simulation Sets

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Authors:Who wrote it

bayesian.simulations_0.2.2.tar.gz
bayesian.simulations_0.2.2.zip(r-4.7-any)bayesian.simulations_0.2.2.zip(r-4.6-any)bayesian.simulations_0.2.2.zip(r-4.5-any)
bayesian.simulations_0.2.2.tgz(r-4.6-any)bayesian.simulations_0.2.2.tgz(r-4.5-any)
bayesian.simulations_0.2.2.tar.gz(r-4.7-any)bayesian.simulations_0.2.2.tar.gz(r-4.6-any)
bayesian.simulations_0.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
bayesian.simulations/json (API)

# Install 'bayesian.simulations' in R:

install.packages('bayesian.simulations', repos = c('https://cipher-epi.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tfojo1/bayesian.simulations/issues

On CRAN:

1.48 score 1 packages 31 exports 33 dependencies

Last updated from:4e0d13e858. Checks:7 WARNING, 2 OK. Indexed: no.

Target	Result	Time
linux-devel	WARNING	136
source / vignettes	OK	183
linux-release	WARNING	117
macos-release	WARNING	88
macos-oldrel	WARNING	113
windows-devel	WARNING	162
windows-release	WARNING	176
windows-oldrel	WARNING	170
wasm-release	OK	83

Exports:acceptance.plot add.parameters assemble.mcmc.from.cache cache.progress create.adaptive.blockwise.metropolis.control create.mcmc.cache create.metropolis.control estimate.update.parameters extend.simulations extract.simset extract.simset.distribution extract.simset.parameter.distribution flatten.simset get.cumulative.acceptance.rates get.rhats get.total.acceptance.rate is.mcmc.cache.complete likelihood.plot mcmc.merge.parallel mcmc.merge.serial pair.plot process.transformations remove.mcmc.cache run.mcmc run.mcmc.from.cache run.mcmc.with.cache subset.mcmc subset.simset thin.simset trace.plot visualize.update.parameters

Dependencies:cli cpp11 distributions farver ggplot2 glue gmm gtable isoband labeling lattice lhs lifecycle magrittr Matrix matrixcalc mvtnorm plyr R6 RColorBrewer Rcpp reshape2 rlang S7 sandwich scales stringi stringr tmvtnorm vctrs viridisLite withr zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add parameters to a simset or parameter_set	add.parameters
Assemble an MCMC object from iterations stored in a cache	assemble.mcmc.from.cache
Report the progress of an MCMC process running from a cache	cache.progress
Set up a cache for running an MCMC from	create.mcmc.cache
Extend the simulations of a simset	extend.simulations
Extracts a simset from an object containing simulations	extract.simset
Extract a distribution of simulation results	extract.simset.distribution
Extract the distribution of parameters in a simset	extract.simset.parameter.distribution
Calculate R-hat statistics for an MCMC object	get.rhats
Check if a cached MCMC has completed sampling	is.mcmc.cache.complete
Merge MCMC objects in parallel	mcmc.merge.parallel
Merge MCMC objects in serial	mcmc.merge.serial
Generate a pairs plot of variables from an mcmc run	pair.plot
exporting for now for debugging	process.transformations
Delete previously set-up cache for running MCMC	remove.mcmc.cache
Run MCMC from a previously set-up cache	run.mcmc.from.cache
The simset class	simset simset-class
Subset an MCMC object	subset.mcmc
Subset a simset	subset.simset
Subset a simset by thinning its simulations	thin.simset
Generate a trace plot from an mcmc run	trace.plot