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[ "create.linear.functional.form" ] }, { "page": "create.linear.spline.functional.form", "title": "Create a Linear Spline Functional Form", "topics": [ "create.linear.spline.functional.form" ] }, { "page": "create.location.based.ifelse.likelihood.instructions", "title": "Create Location Based If-Else Likelihood Instructions", "topics": [ "create.location.based.ifelse.likelihood.instructions" ] }, { "page": "create.log.linear.functional.form", "title": "Create a Functional Form that is Linear on the Log Scale", "topics": [ "create.log.linear.functional.form" ] }, { "page": "create.logistic.linear.functional.form", "title": "Create a Functional Form that is Linear on the Logistic Scale", "topics": [ "create.logistic.linear.functional.form" ] }, { "page": "create.logistic.spline.functional.form", "title": "Create a Logistic Spline Functional Form", "topics": [ "create.logistic.spline.functional.form" ] }, { "page": "create.logistic.tail.functional.form", "title": "Create a \"Logistic Tail\" Functional Form", "topics": [ "create.logistic.tail.functional.form" ] }, { "page": "create.model.foreground", "title": "Create a Model Foreground Object", "topics": [ "create.model.foreground" ] }, { "page": "create.monotonic.criteria.based.intervention", "title": "Create a \"Guess-and-Check\" Intervention that Must Satisfy Some Criteria by Varying Parameters", "topics": [ "create.monotonic.criteria.based.intervention" ] }, { "page": "create.monotonic.criterion", "title": "Create a criterion for monotonic parameter, criteria-based interventions", "topics": [ "create.monotonic.criterion" ] }, { "page": "create.natural.spline.functional.form", "title": "Create a Natural Spline Functional Form", "topics": [ "create.natural.spline.functional.form" ] }, { "page": "create.nested.proportion.likelihood.instructions", "title": "Create Nested Proportion Likelihood Instructions", "concept": [ "Nested Proportion Likelihoods" ], "topics": [ "create.nested.proportion.likelihood.instructions" ] }, { "page": "create.nested.proportion.likelihood.instructions.with.included.multiplier", "title": "Create Nested Proportion Likelihood Instructions With Included Multiplier", "concept": [ "Nested Proportion Likelihoods" ], "topics": [ "create.nested.proportion.likelihood.instructions.with.included.multiplier" ] }, { "page": "create.ontology.mapping", "title": "Create a mapping that allows transformations of arrays", "topics": [ "create.ontology.mapping" ] }, { "page": "create.other.catchall.ontology.mapping", "title": "Create an ontology mapping that lumps otherwise unspecified categories into an \"other\" category", "topics": [ "create.other.catchall.ontology.mapping" ] }, { "page": "create.outcome.location.mapping", "title": "Create Outcome Location Mapping", "topics": [ "create.outcome.location.mapping" ] }, { "page": "create.outcome.metadata", "title": "Create a metadata object for tracked quantities or tracked transitions", "topics": [ "create.outcome.metadata" ] }, { "page": "create.simset.collection", "title": "Create a Collection of JHEEM Simulation-Sets", "topics": [ "create.simset.collection" ] }, { "page": "create.solver.metadata", "title": "Create Solver Metadata", "topics": [ "create.solver.metadata" ] }, { "page": "create.static.functional.form", "title": "Create an Static (Time-Invariant) Functional Form", "topics": [ "create.static.functional.form" ] }, { "page": "create.style.manager", "title": "Create A Style Manager", "topics": [ "create.style.manager" ] }, { "page": "create.target.population", "title": "Create a Target Population to Which Interventions May be Applied", "concept": [ "Functions to create Target Populations" ], "topics": [ "create.target.population" ] }, { "page": "create.time.lagged.comparison.likelihood.instructions", "title": "Create JHEEM Basic Likelihood Instructions", "concept": [ "Basic Likelihoods" ], "topics": [ "create.time.lagged.comparison.likelihood.instructions" ] }, { "page": "create.time.lagged.comparison.likelihood.instructions.with.included.multiplier", "title": "Create JHEEM Basic Likelihood Instructions", "concept": [ "Basic Likelihoods" ], "topics": [ "create.time.lagged.comparison.likelihood.instructions.with.included.multiplier" ] }, { "page": "create.time.lagged.comparison.nested.proportion.likelihood.instructions", "title": "Create Time Lagged Comparison Nested Proportion Likelihood Instructions", "concept": [ "Nested Proportion Likelihoods" ], "topics": [ "create.time.lagged.comparison.nested.proportion.likelihood.instructions" ] }, { "page": "declare.data.managers", "title": "Declare the data managers a specification uses", "topics": [ "declare.data.managers" ] }, { "page": "diff.target.populations", "title": "Create a Target Population that is the DIFFERENCE between two other Target Populations", "concept": [ "Functions to create Target Populations" ], "topics": [ "diff.target.populations" ] }, { "page": "disable.jheem.solver.tracking", "title": "Disable JHEEM Solver Tracking", "topics": [ "disable.jheem.solver.tracking" ] }, { "page": "distribute.dimension.values", "title": "Distribute dimension values", "topics": [ "distribute.dimension.values" ] }, { "page": "enable.jheem.solver.tracking", "title": "Enable JHEEM Solver Tracking", "topics": [ "enable.jheem.solver.tracking" ] }, { "page": "examine.get.mappings.to.align.ontologies", "title": "Identify any Reasons for a Failure to Get Mappings to Align Ontologies", "topics": [ "examine.get.mappings.to.align.ontologies" ] }, { "page": "examine.get.ontology.mapping", "title": "Identify any Reasons for a Failure to Map Ontologies", "topics": [ "examine.get.ontology.mapping" ] }, { "page": "examine.recent.failed.ontology.mapping", "title": "Get Detailed Information on a Recent Failed Attempt to Map Ontologies", "topics": [ "examine.recent.failed.ontology.mapping" ] }, { "page": "execute.plotly.plot", "title": "Execute Plotly Plot A utility that performs the plot-rendering half of the plot simulations in plotly operation for applications like webtools that need the step to be separate.", "topics": [ "execute.plotly.plot" ] }, { "page": "execute.simplot", "title": "Execute Simplot A utility that performs the plot-rendering half of the simplot operation for applications like webtools that need the step to be separate.", "topics": [ "execute.simplot" ] }, { "page": "expand.array", "title": "Expand an Array to Greater Dimensions", "topics": [ "expand.array" ] }, { "page": "extract.last.simulation.from.calibration", "title": "Extract the Last Simulation From A Calibration", "topics": [ "extract.last.simulation.from.calibration" ] }, { "page": "find.ontology.mapping", "title": "Find Ontology Mapping", "topics": [ "find.ontology.mapping" ] }, { "page": "get.calibration.progress", "title": "Get Calibration Progress", "topics": [ "get.calibration.progress" ] }, { "page": "get.collapse.array.indices", "title": "Get a Set of Indices to Collapse One Array into Another", "topics": [ "get.collapse.array.indices" ] }, { "page": "get.cumulative.age.counts.smoother", "title": "Get a function that projects a smoothed cumulative count up to a given age", "topics": [ "get.cumulative.age.counts.smoother" ] }, { "page": "get.data.binding", "title": "Get the active data binding", "topics": [ "get.data.binding" ] }, { "page": "get.data.binding.identity", "title": "Get the identity of a data binding", "topics": [ "get.data.binding.identity" ] }, { "page": "get.data.inputs", "title": "Get the data inputs recorded for an artifact", "topics": [ "get.data.inputs" ] }, { "page": "get.data.manager", "title": "Get a data manager by name", "topics": [ "get.data.manager" ] }, { "page": "get.data.manager.provenance", "title": "Get the provenance of a data manager", "topics": [ "get.data.manager.provenance" ] }, { "page": "get.data.outcome.pretty.names", "title": "Get pretty names for outcomes", "topics": [ "get.data.outcome.descriptions", "get.data.outcome.labels", "get.data.outcome.pretty.names" ] }, { "page": "get.data.source.full.names", "title": "Get full names for data sources", "topics": [ "get.data.source.full.names", "get.data.source.short.names" ] }, { "page": "get.default.data.manager", "title": "Get the default data manager", "topics": [ "get.default.data.manager" ] }, { "page": "get.default.style.manager", "title": "Get the Default Style Manager", "topics": [ "get.default.style.manager" ] }, { "page": "get.expand.array.indices", "title": "Get the Array Indices Under Expanded Dim-names", "topics": [ "get.expand.array.indices" ] }, { "page": "get.expand.then.collapse.array.indices", "title": "Get a Set of Indices to Collapse One Array into Another, expanding the first array if needed to add dimensions", "topics": [ "get.expand.then.collapse.array.indices" ] }, { "page": "get.identity.ontology.mapping", "title": "Get an \"Identity\" Ontology Mapping (that does not change data structure when applied)", "concept": [ "Functions to identify why ontologies fail to map" ], "topics": [ "get.identity.ontology.mapping" ] }, { "page": "get.jheem.root.directory", "title": "Get JHEEM Root Directory #' @description Gets the directory that calibration directories and files will be written into, if it has been set with \"set.jheem.root.directory\"", "topics": [ "get.jheem.root.directory" ] }, { "page": "get.jheem.solver.tracked.info", "title": "Get JHEEM Solver Tracked Info", "topics": [ "get.jheem.solver.tracked.info" ] }, { "page": "get.locations.with.data", "title": "Get locations with data for an outcome", "topics": [ "get.locations.with.data" ] }, { "page": "get.mappings.to.align.ontologies", "title": "Get a Pair of Ontology Mappings that Aligns two Data Elements", "topics": [ "get.mappings.to.align.ontologies" ] }, { "page": "get.mcmc.mixing.statistic", "title": "Get MCMC Mixing Statistic", "topics": [ "get.mcmc.mixing.statistic" ] }, { "page": "get.ontology.error.debug.info", "title": "Get Ontology Error Debug Info", "topics": [ "get.ontology.error.debug.info" ] }, { "page": "get.ontology.mapping", "title": "Get an Ontology Mapping to Transform Data", "topics": [ "get.ontology.mapping" ] }, { "page": "get.ontology.mapping.matrix", "title": "Get a Matrix that Applies an Ontology Mapping", "topics": [ "get.ontology.mapping.matrix" ] }, { "page": "get.p.bias.estimates", "title": "Get P Bias Estimates", "concept": [ "Nested Proportion Likelihoods" ], "topics": [ "get.p.bias.estimates" ] }, { "page": "get.prior.versions", "title": "Get Prior JHEEM Model Versions", "concept": [ "JHEEM Version Management Functions" ], "topics": [ "get.prior.versions" ] }, { "page": "get.registered.ontology", "title": "param ontology.name The name of an ontology (must be registered in the data manager)", "topics": [ "get.registered.ontology" ] }, { "page": "get.simset.data", "title": "Get Simulation Data", "topics": [ "get.simset.data" ] }, { "page": "get.simset.filename", "title": "Get Simset Filename", "topics": [ "get.simset.filename" ] }, { "page": "get.simset.filename.and.dir", "title": "Get Simset Filename and Directory", "topics": [ "get.simset.filename.and.dir" ] }, { "page": "get.simset.params", "title": "Get Simulation Set Paramater Values", "topics": [ "get.simset.params" ] }, { "page": "get.simulation.metadata", "title": "Get a Simulation Metadata Object", "topics": [ "get.simulation.metadata" ] }, { "page": "get.specification.for.version", "title": "Get a JHEEM Specification Object", "concept": [ "JHEEM Version Management Functions" ], "topics": [ "get.specification.for.version" ] }, { "page": "get.specification.metadata", "title": "Get a Specification Metadata Object", "topics": [ "get.specification.metadata" ] }, { "page": "get.year.bounds.for.outcome", "title": "Get year bounds for outcome", "topics": [ "get.year.bounds.for.outcome" ] }, { "page": "import.data", "title": "Import data from another JHEEM Data Manager", "topics": [ "import.data" ] }, { "page": "incomplete.dimensions", "title": "Get an ontology's incomplete dimensions", "topics": [ "incomplete.dimensions" ] }, { "page": "incomplete.dimensions.ontology", "title": "Get an ontology's incomplete dimensions", "topics": [ "incomplete.dimensions.ontology" ] }, { "page": "inspect.marginals", "title": "Inspect marginal sums between stratifications", "topics": [ "inspect.marginals" ] }, { "page": "instantiate.likelihood", "title": "Instantiate Likelihood", "topics": [ "instantiate.likelihood" ] }, { "page": "interpolate", "title": "Interpolate Values", "topics": [ "interpolate" ] }, { "page": "intersect.target.populations", "title": "Create a Target Population that is the INTERSECTION of Other Target Populations", "concept": [ "Functions to create Target Populations" ], "topics": [ "intersect.target.populations" ] }, { "page": "is_complete", "title": "Get indicators of which dimensions in an ontology are complete", "topics": [ "is.complete", "is_complete" ] }, { "page": "is_complete.ontology", "title": "Get indicators of which dimensions in an ontology are complete", "topics": [ "is_complete.ontology" ] }, { "page": "is.ontology", "title": "Test if an object is of type 'ontology'", "topics": [ "is.ontology" ] }, { "page": "JHEEM", "title": "Still need to flesh out this interface", "topics": [ "JHEEM" ] }, { "page": "jheem2", "title": "jheem2: A package for setting up and running simulations using the JHEEM Engine #'", "topics": [ "jheem2-package", "jheem2" ] }, { "page": "jheem2-calibration-params", "title": "JHEEM Calibration Parameters", "topics": [ "jheem2-calibration-params" ] }, { "page": "jheem2-data-manager-params", "title": "JHEEM Data Manager Parameters", "topics": [ "jheem2-data-manager-params" ] }, { "page": "jheem2-likelihood-params", "title": "JHEEM Likelihood Parameters", "topics": [ "jheem2-likelihood-params" ] }, { "page": "jheem2-params", "title": "JHEEM Parameters", "topics": [ "jheem2-params" ] }, { "page": "jheem2-simset-params", "title": "JHEEM Simulation Set Parameters", "topics": [ "jheem2-simset-params" ] }, { "page": "join.interventions", "title": "Join Multiple Interventions into a Single Intervention", "topics": [ "join.interventions" ] }, { "page": "join.likelihood.instructions", "title": "Make a single (joint) set of likelihood instructions out of two or more likelihood instructions objects", "topics": [ "join.likelihood.instructions" ] }, { "page": "join.outcome.location.mappings", "title": "Join Outcome Location Mappings", "topics": [ "join.outcome.location.mappings" ] }, { "page": "join.simulation.sets", "title": "Join multiple simulation sets into a single set", "topics": [ "join.simulation.sets" ] }, { "page": "list.data.managers", "title": "List registered data managers", "topics": [ "list.data.managers" ] }, { "page": "load.data.manager", "title": "Load a cached data manager", "topics": [ "load.data.manager" ] }, { "page": "load.simulation.set", "title": "Load a Simulation Set", "topics": [ "load.simulation.set" ] }, { "page": "make.age.strata.names", "title": "Make Names for a Set of Age Strata", "topics": [ "make.age.strata.names" ] }, { "page": "map.value.ontology", "title": "Map Value's Ontology", "concept": [ "Functions to identify why ontologies fail to map" ], "topics": [ "map.value.ontology" ] }, { "page": "mcmc.traceplot", "title": "Create Traceplot of MCMC", "topics": [ "mcmc.traceplot" ] }, { "page": "names-set-.ontology", "title": "Modify an Ontology's Names", "topics": [ "names<-.ontology" ] }, { "page": "ontology", "title": "Create an ontology object", "topics": [ "ontology" ] }, { "page": "ONTOLOGY.MAPPING", "title": "The Constructor", "topics": [ "ONTOLOGY.MAPPING" ] }, { "page": "outer.join.dim.names", "title": "Join multiple dim.names lists", "topics": [ "outer.join.dim.names" ] }, { "page": "parse.age.strata.names", "title": "Convert Age Strata Names into Lower and Upper Bounds for Each Stratum", "topics": [ "parse.age.strata.names" ] }, { "page": "parse.simset.filename", "title": "Parse Simset Filename", "topics": [ "parse.simset.filename" ] }, { "page": "parse.year.names", "title": "Parse Year Names", "topics": [ "parse.year.names" ] }, { "page": "percentage.cache.complete", "title": "Get Percentage of Run Cache Completed", "topics": [ "percentage.cache.complete" ] }, { "page": "plot.data.validation", "title": "Cleaning and verifying the plotting data so it can be properly plotted", "topics": [ "plot.data.validation" ] }, { "page": "plot.simulations", "title": "Plot Simulations With Plotly", "topics": [ "plot.simulations" ] }, { "page": "prepare.plot", "title": "Prepare Plot Data A utility that performs the data-pulling half of the simplot operation for applications like webtools that need the step to be separate.", "topics": [ "prepare.plot" ] }, { "page": "print.ontology", "title": "Print an ontology", "topics": [ "print.ontology" ] }, { "page": "pull.data", "title": "Pull data from a data manager", "topics": [ "pull.data" ] }, { "page": "put.data", "title": "Put data into a data manager", "topics": [ "put.data" ] }, { "page": "put.data.long.form", "title": "Put long-form data into a data manager #'@inheritParams distribute.dimension.values", "topics": [ "put.data.long.form" ] }, { "page": "rebuild.data.binding", "title": "Rebuild the data binding an artifact was built under", "topics": [ "rebuild.data.binding" ] }, { "page": "register.aging", "title": "Register Information about Aging for a Model Specification", "concept": [ "Defining Core Components for a Model Specification" ], "topics": [ "register.aging" ] }, { "page": "register.calibrated.parameters.for.version", "title": "Register Parameters to Be Used in Calibrating a JHEEM Version", "topics": [ "register.calibrated.parameters.for.version" ] }, { "page": "register.calibration.info", "title": "Register Calibration Info", "topics": [ "register.calibration.info" ] }, { "page": "register.data.manager", "title": "Register a data manager under a name", "topics": [ "register.data.manager" ] }, { "page": "register.data.metadata.field", "title": "Register a metadata field to a data manager", "topics": [ "register.data.metadata.field" ] }, { "page": "register.data.ontology", "title": "Register a new data ontology to a data manager before putting data to it", "topics": [ "register.data.ontology" ] }, { "page": "register.data.outcome", "title": "Register an outcome to a data manager before putting data for that outcome", "topics": [ "register.data.outcome" ] }, { "page": "register.data.source", "title": "Register a data source to a data manager before putting data from that source", "topics": [ "register.data.source" ] }, { "page": "register.default.parameter.values", "title": "Register Default Parameter Values", "topics": [ "register.default.parameter.values" ] }, { "page": "register.fixed.model.strata", "title": "Set Whether to Fix Strata Sizes During a Time Period", "topics": [ "register.fixed.model.strata" ] }, { "page": "register.initial.population", "title": "Set The Initial Model Population", "topics": [ "register.initial.population" ] }, { "page": "register.model.element", "title": "Register a Model Element", "topics": [ "register.model.element" ] }, { "page": "register.model.element.values", "title": "A convenience function to streamline registering multiple model.elements for which we only need to specify a value", "topics": [ "register.model.element.values" ] }, { "page": "register.model.foreground", "title": "Register a Foreground for a Model Specification", "topics": [ "register.model.foreground" ] }, { "page": "register.model.mechanism", "title": "Register Information about Disease Transmission for a Model Specification", "concept": [ "Defining Core Components for a Model Specification" ], "topics": [ "register.model.mechanism" ] }, { "page": "register.model.quantity", "title": "Register a Model Quantity", "topics": [ "register.model.quantity" ] }, { "page": "register.model.quantity.subset", "title": "Register a Value to a Subset of a Model Quantity or Transition", "topics": [ "register.model.quantity.subset" ] }, { "page": "register.model.specification", "title": "Register a JHEEM Model Specification", "concept": [ "JHEEM Version Management Functions" ], "topics": [ "register.model.specification" ] }, { "page": "register.mortality", "title": "Register Information about Mortality for a Model Specification", "concept": [ "Defining Core Components for a Model Specification" ], "topics": [ "register.mortality" ] }, { "page": "register.natality", "title": "Register Information about Natality (Births) for a Model Specification", "concept": [ "Defining Core Components for a Model Specification" ], "topics": [ "register.natality" ] }, { "page": "register.ontology.mapping", "title": "Create and register a mapping that allows transformations of arrays", "topics": [ "register.ontology.mapping" ] }, { "page": "register.parent.data.source", "title": "Register a parent data source to a data manager", "topics": [ "register.parent.data.source" ] }, { "page": "register.remission", "title": "Register Information about Remission from Infection for a Model Specification", "concept": [ "Defining Core Components for a Model Specification" ], "topics": [ "register.remission" ] }, { "page": "register.sampled.parameters.for.version", "title": "Register Parameters to Be Sampled Prior to Making Projections from a JHEEM Version", "topics": [ "register.sampled.parameters.for.version" ] }, { "page": "register.set.parameters.for.version", "title": "Register Parameters to Be Set for Running a Simulation", "topics": [ "register.set.parameters.for.version" ] }, { "page": "register.transition", "title": "Register Information about Disease Transmission for a Model Specification", "concept": [ "Defining Core Components for a Model Specification" ], "topics": [ "register.transition" ] }, { "page": "register.transmission", "title": "Register Information about Disease Transmission for a Model Specification", "concept": [ "Defining Core Components for a Model Specification" ], "topics": [ "register.transmission" ] }, { "page": "register.transmute.calibration.info", "title": "Register Transmute Calibration Info", "topics": [ "register.transmute.calibration.info" ] }, { "page": "remove.data", "title": "Remove Data From Data Manager", "topics": [ "remove.data" ] }, { "page": "rerun.simulations", "title": "Rerun a Simulation Set", "topics": [ "rerun.simulations" ] }, { "page": "resolve.intervention.effect", "title": "#@export", "topics": [ "resolve.intervention.effect" ] }, { "page": "resolve.ontology.dimension.values", "title": "Resolve dimension.values into a set of dimnames for an ontology", "topics": [ "resolve.ontology.dimension.values" ] }, { "page": "restratify.age.counts", "title": "Re-distribute counts according to one set of age brackets into a different set of age brackets", "topics": [ "restratify.age.counts" ] }, { "page": "retrieve.simulation.set", "title": "Retrieve a Saved Simulation Set", "topics": [ "retrieve.simulation.set" ] }, { "page": "run.calibration", "title": "Run A Calibration", "topics": [ "run.calibration" ] }, { "page": "run.simulations.from.parameters", "title": "Run a Simulations from a Set of Parameters", "topics": [ "run.simulations.from.parameters" ] }, { "page": "run.transmute.calibration", "title": "Run Transmute Calibration", "topics": [ "run.transmute.calibration" ] }, { "page": "save.simulation.set", "title": "Save a JHEEM Simulation Set", "topics": [ "save.simulation.set" ] }, { "page": "set.data.binding", "title": "Set the session's data binding", "topics": [ "set.data.binding" ] }, { "page": "set.data.release.resolver", "title": "Set the function that loads a data manager release", "topics": [ "set.data.release.resolver" ] }, { "page": "set.default.data.manager", "title": "Set the default data manager", "topics": [ "set.default.data.manager" ] }, { "page": "set.default.style.manager", "title": "Set the Default Style Manager", "topics": [ "set.default.style.manager" ] }, { "page": "set.element.functional.form.alphas.from.parameters", "title": "Set multiple functional form main effect alphas from parameters", "topics": [ "set.element.functional.form.alphas.from.parameters" ] }, { "page": "set.element.functional.form.from.time", "title": "Set the Times From and To Which the Functional Form Determines a Model Element's Value", "concept": [ "Functions to create and modify a model settings" ], "topics": [ "set.element.functional.form.from.time", "set.element.functional.form.to.time" ] }, { "page": "set.element.functional.form.future.slope", "title": "Set a \"Future Slope\" and the time after which it applies, for a model element", "concept": [ "Functions to create and modify a model settings" ], "topics": [ "set.element.functional.form.future.slope", "set.element.functional.form.future.slope.after.time" ] }, { "page": "set.element.functional.form.interaction.alphas", "title": "Set Interaction Alpha Values for a Functional Form for a Model Element", "concept": [ "Functions to create and modify a model settings" ], "topics": [ "set.element.functional.form.interaction.alphas" ] }, { "page": "set.element.functional.form.main.effect.alphas", "title": "Set Main Effect Alpha Values for a Functional Form for a Model Element", "concept": [ "Functions to create and modify model settings" ], "topics": [ "set.element.functional.form.main.effect.alphas" ] }, { "page": "set.element.ramp.times", "title": "Set a ramp or taper (times and values) for a model element", "concept": [ "Functions to create and modify a model settings" ], "topics": [ "set.element.ramp.times", "set.element.ramp.values", "set.element.taper.times", "set.element.taper.values" ] }, { "page": "set.element.value", "title": "Set the Value of a Model Element", "concept": [ "Functions to modify model settings" ], "topics": [ "set.element.value" ] }, { "page": "set.jheem.root.directory", "title": "Set JHEEM Root Directory", "topics": [ "set.jheem.root.directory" ] }, { "page": "set.up.calibration", "title": "Set Up Calibration", "topics": [ "set.up.calibration" ] }, { "page": "set.up.transmute.calibration", "title": "Set Up Transmute Calibration", "topics": [ "set.up.transmute.calibration" ] }, { "page": "simplot", "title": "Plot Simulations And Data", "topics": [ "simplot" ] }, { "page": "simplot.data.only", "title": "Simplot Data Only", "topics": [ "simplot.data.only" ] }, { "page": "standardize.age.strata.names", "title": "Convert Age Strata Names to a Standard Form", "topics": [ "standardize.age.strata.names" ] }, { "page": "STATIC.FUNCTIONAL.FORM", "title": "Create an Static (Time-Invariant) Functional Form", "topics": [ "STATIC.FUNCTIONAL.FORM" ] }, { "page": "subset_data", "title": "Subset a JHEEM Data Manager", "topics": [ "subset_data" ] }, { "page": "subset.simset", "title": "Subset a Simulation Set", "topics": [ "subset.simset" ] }, { "page": "thin.simset", "title": "Thin A Simulation Set", 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